IMPACT_S

Class RCSBTools

java.lang.Object

IMPACT_S.RCSBTools

public class RCSBTools
extends java.lang.Object

Basic functionality for downloading PDB files from RCSB website.

Author:

Emanuel Maldonado

See Also:

GUIPDBTool

Constructor Summary

Constructors

Constructor and Description
RCSBTools()

Method Summary

Modifier and Type	Method and Description
java.lang.String	checkFailResponse(java.lang.String url) Check if the provided url already containing the pdbcode, points to an existing pdb file resource.
java.lang.String	getRCSBPDBFastaFileURL() Get direct download link for PDB Fasta file. Just append the pdbid at the end.
java.lang.String	getRCSBPDBFileURL() Get direct download link for PDB file. Just append the pdbid at the end.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RCSBTools

public RCSBTools()

Method Detail

getRCSBPDBFileURL

public java.lang.String getRCSBPDBFileURL()

Get direct download link for PDB file.
Just append the pdbid at the end.

Returns:

pdb file url.

getRCSBPDBFastaFileURL

public java.lang.String getRCSBPDBFastaFileURL()

Get direct download link for PDB Fasta file.
Just append the pdbid at the end.

Returns:

fasta file url.

checkFailResponse

public java.lang.String checkFailResponse(java.lang.String url)

Check if the provided url already containing the pdbcode, points to an existing pdb file resource.

Parameters:

url - the url containing the pdb code (URL+code).

Returns:

RCSB response code and message separated by (':').
Eg.:ServerCode:ServerMessageCode (eg.: 404:Not Found)