public class GUIDialogs
extends javax.swing.JFrame
javax.swing.JFrame.AccessibleJFramejava.awt.Window.AccessibleAWTWindow, java.awt.Window.Type| Modifier and Type | Field and Description |
|---|---|
static int |
QUESTION_ASK_CHOICE
QUESTION_ASK_CHOICE:
"Please select the file format:" "Choosing cancel, will not allow file selection." |
static int |
QUESTION_ASK_SAVE
QUESTION_ASK_SAVE:
"Choose file format to save in:" |
static int |
QUESTION_CHOICE
QUESTION_CHOICE:
"If the extension doesn't match the file format, please choose. Otherwise, choosing Cancel will try to get it through its extension." |
accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabledCROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSORBOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT| Constructor and Description |
|---|
GUIDialogs()
General case.
|
GUIDialogs(java.awt.Component parent)
Specific case.
Parent component only in dialogs UTIL_BFF, UTIL_FEF and UTIL_FMF, used in initialization process. In other dialogs works like in general case constructor. |
| Modifier and Type | Method and Description |
|---|---|
void |
showFFC_DSLF(java.lang.String formattxt,
java.lang.String seqdiff)
FileFormatConverter class.
DSLF : Error_Message Different Sequence Lengths Found. |
void |
showFFC_FBF(java.lang.String formattxt)
FileFormatConverter class.
FBF : Error_Message File Bad Format. |
void |
showFFC_FNC()
FileFormatConverter class.
FNC : Error_Message Format Not Chosen... |
void |
showFFC_RSAOB(java.lang.String formattxt,
int seqcount,
java.lang.String aiobex)
FileFormatConverter class.
RSAOB : Error_Message Reading Sequence Array Out Of Bounds |
void |
showFFC_VMPF()
FileFormatConverter class.
VMPF : Error_Message Values Missing in Phylip File first line. |
void |
showGUI_CNSF(java.lang.String fileNotsaved,
java.lang.String title,
java.lang.String addtext)
GUI class.
CNSF : Error_Message Could Not Save File. |
void |
showGUI_CO()
GUI class.
CO : Warning_Message Codeml about Options. |
void |
showGUI_CONC()
GUI class.
CONC : Error_Message Codeml Options Not Chosen. |
int |
showGUI_CV(java.lang.String question,
java.lang.String title)
GUI class.
CV : Question_Message for Choice Value. |
void |
showGUI_EF(java.lang.String title,
java.lang.String addText)
GUI class.
EF : Warning_Message Empty Fields. |
int |
showGUI_FAEM(java.lang.String title)
GUI class.
FAEM : Question_Message File Already Exists Make new? |
void |
showGUI_FBF(java.lang.String filename)
GUI class.
FBF : Error_Message File Bad Format. |
void |
showGUI_FNAN(java.lang.String title)
GUI class.
FNAN : Error_Message for Found Not A Number. |
void |
showGUI_FNE(java.lang.String title)
GUI class.
FNE : Error_Message for File does Not Exist. |
void |
showGUI_FNE(java.lang.String filename,
java.lang.String title)
GUI class.
FNE : Error_Message for File does Not Exist. |
void |
showGUI_FNO(java.lang.String title)
GUI class.
FNO : Error_Message File Not Opened. |
void |
showGUI_FVR(java.lang.String title,
java.lang.String infringement)
GUI class.
FVR : Error_Message Fields Violating Rules. |
void |
showGUI_GEM(java.lang.String title,
java.lang.String addText)
GUI class.
GEM : Information_Message Generic Error Message. |
void |
showGUI_GIM(java.lang.String title,
java.lang.String addText)
GUI class.
GIM : Information_Message Generic Information Message. |
int |
showGUI_GWM(java.lang.String title,
java.lang.String reason)
GUI class.
GWM : Warning_Message Generic Warning Message. |
void |
showGUI_IFPSV(java.lang.String filename,
java.lang.String program)
GUI class.
IFPSV : Error_Message Incorrect File for Program Stat Values. |
java.lang.String |
showGUI_IV(java.lang.String question,
java.lang.String title)
GUI class.
IV : Question_Message for Insert Value. |
void |
showGUI_NAN(java.lang.String title)
GUI class.
NAN : Error_Message for Not A Number. |
void |
showGUI_NPPF(java.lang.String flname)
GUI class.
NPPF : Error_Message Not Proper PDB File. |
int |
showGUI_OCCF(java.lang.String existingFilename)
GUI class.
OCCF : Warning_Message Overwrite Codeml Control File. |
void |
showGUI_PVCF()
GUI class.
PVCF : Information_Message Please Verify Correct Format field. |
int |
showGUI_RCSC()
GUI class.
RCSC : Warning_Message Run Codeml without Save Changes |
int |
showGUI_RE()
GUI class.
RE : Question_Message Really Exit. |
int |
showGUI_RETR()
GUI class.
RETR : Question_Message Really Exit Tasks Running. |
int |
showGUI_RETRW()
GUIProtToSwissModel class.
RETRW : Question_Message Really Exit Task Running on Window. |
int |
showGUI_REWO()
GUI class.
REWO : Question_Message Really Exit Windows Open. |
int |
showGUI_SFC()
GUI class.
SFC : Question_Message Set File as Current ? |
int |
showGUI_UNMA()
GUI class.
UNMA : Question_Message Use New MSA File also? |
java.lang.String |
showGUI_VC(java.lang.String question,
java.lang.String title,
java.lang.Object[] selValues,
java.lang.Object initialValue)
GUI class.
VC : Question_Message for Value Choice. |
java.lang.String |
showGUI_VE(java.lang.String question,
java.lang.String title,
java.lang.Object initialValue)
GUI class.
VE : Question_Message for Value Edition. |
void |
showGUI_VP(java.lang.String addtext)
GUI class.
VP : Information_Message Viewing Property name. |
void |
showGUI_WD(java.lang.String dirname)
GUI class.
WD : Information_Message Wrong Directory name. |
void |
showGUI_WF(java.lang.String filename)
GUI class.
WF : Information_Message Wrong File name. |
java.lang.String |
showGUIAE_CFF(java.lang.String[] formats,
int quest)
GUIAlignmentEditor class.
CFF : Question_Message Choose File Format. |
int |
showGUIAE_FAEO(java.lang.String title)
GUIAlignmentEditor class.
FAEO : Question_Message File Already Exists Overwrite? |
void |
showGUIAE_FENF(java.lang.String title)
GUIAlignmentEditor class.
FENF : Error_Message File Extension Not Found. |
void |
showGUIAE_FS(java.lang.String filesaved)
GUIAlignmentEditor class.
FS : Information_Message File Saved. |
void |
showGUIAE_PONC()
GUIAlignmentEditor class.
PONC : Error_Message PhyML Options Not Chosen. |
int |
showGUIAE_RPSC()
GUIAlignmentEditor class.
RPSC : Warning_Message Run PhyML without Save Changes |
void |
showGUICP_DC(java.lang.String text)
GUIConfPreferences class.
DC : Information_Message Directory Created. |
void |
showGUICP_IURL(java.lang.String err)
GUIConfPreferences class.
IURL : Error_Message Invalid URL. |
void |
showGUICP_NPAF()
GUIConfPreferences class.
NPAF : Error_Message Not Proper AAIndex1 file. |
void |
showGUICP_OS()
GUIPreferences class.
OS : Information_Message Options Saved. |
void |
showGUICP_PW()
GUIConfPreferences class.
PW : Plain_Message Please Wait. |
void |
showGUICP_UOK(java.lang.String text)
GUIConfPreferences class.
UOK : Information_Message URL OK. |
void |
showGUICP_URNA()
GUIConfPreferences class.
URNA : ERROR_Message URL Resource does Not seem to be Available. |
void |
showGUICP_URNE()
GUIConfPreferences class.
URNE : ERROR_Message URL Resource does Not Exist. |
java.lang.String |
showGUIFFC_CPFT(java.lang.String[] pformats)
GUIFileFormatConverter class.
CPFT : Question_Message Choose Phylip Format Type |
int |
showGUIRS_NSS(java.lang.String title)
ResultsSummary class.
NSS : Warning_Message No Selected Sequences. |
void |
showRS_FBF()
ResultsSummary class.
FBF : Error_Message File Bad Format. |
void |
showRS_SCNF()
ResultsSummary class.
SCNF : Error_Message Selected Column Not Found. |
void |
showRV_RCAOB(java.lang.String flname,
int csvrow,
java.lang.String aiobex)
ResultsView class.
RCAOB : Error_Message Reading CSV file Array Out Of Bounds |
void |
showTSTP_ATS(int maxcodon,
int foundcodon)
AlignmentOperations class.
ATS : Error_Message Alignment Too Short. |
void |
showUTIL_BFF(java.lang.String file,
java.lang.String errorline)
Utilities class.
BFF : Error_Message Bad File Format. |
void |
showUTIL_FEF(java.lang.String program_file,
int nummsg)
Utilities class.
FEF: Warning_Message File with Empty Fields. |
void |
showUTIL_FMF(java.lang.String program_file)
Utilities class.
FMF : Warning_Message File with Missing Fields. |
void |
showUTIL_FNF(java.lang.String program_file)
Utilities class.
FNF: Warning_Message File Not Found. |
void |
showUTIL_GWL(java.lang.String rightLoc)
Utilities class.
GWL : Error_Message GUI in Wrong Location |
void |
showUTIL_IOF()
Utilities class.
IOF : Error_Message Incorrect Options File syntax. |
void |
showUTIL_MD(java.lang.String rightDir,
java.lang.String otherinfo)
Utilities class.
MD : Error_Message Missing Directory |
void |
showUTIL_NAF(java.lang.String aai1Name)
Utilities class.
NAF : Error_Message Not an AAIndex1 File. |
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, updateaddNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecoratedaddPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFrontadd, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTreeaction, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCyclepublic static final int QUESTION_CHOICE
public static final int QUESTION_ASK_SAVE
public static final int QUESTION_ASK_CHOICE
public GUIDialogs()
public GUIDialogs(java.awt.Component parent)
parent - in this specific case normally its value is GUIInitializeBox object.public java.lang.String showGUI_IV(java.lang.String question,
java.lang.String title)
question - dialog text.title - dialog title.showGUI_VE(java.lang.String, java.lang.String, java.lang.Object)public java.lang.String showGUI_VE(java.lang.String question,
java.lang.String title,
java.lang.Object initialValue)
question - dialog text.title - dialog title.initialValue - value to be changed/edited.showGUI_IV(java.lang.String, java.lang.String)public java.lang.String showGUI_VC(java.lang.String question,
java.lang.String title,
java.lang.Object[] selValues,
java.lang.Object initialValue)
question - dialog text.title - dialog title.selValues - possible selections of values.initialValue - value to be changed/edited.showGUI_IV(java.lang.String, java.lang.String)public int showGUI_CV(java.lang.String question,
java.lang.String title)
question - question message.title - dialog window title.public void showGUI_NAN(java.lang.String title)
title - dialog window title.public void showGUI_FNAN(java.lang.String title)
title - dialog window title.public void showGUI_NPPF(java.lang.String flname)
flname - (incorrect) PDB file name.public void showGUI_FNE(java.lang.String title)
title - dialog window title.public void showGUI_FNE(java.lang.String filename,
java.lang.String title)
filename - specify name of nonexistent file.title - dialog window title.public void showGUI_FNO(java.lang.String title)
title - dialog title.public int showGUI_SFC()
public void showGUI_PVCF()
public int showGUI_RCSC()
public void showGUI_EF(java.lang.String title,
java.lang.String addText)
title - dialog title.addText - specify which fields are empty; or set to empty string.public void showGUI_FVR(java.lang.String title,
java.lang.String infringement)
title - dialog title.infringement - specify which fields are empty; or set to empty string.public void showTSTP_ATS(int maxcodon,
int foundcodon)
maxcodon - maximum number of codons.foundcodon - number of codons found.public int showGUI_GWM(java.lang.String title,
java.lang.String reason)
title - dialog title.reason - specify which fields are empty; or set to empty string.public void showGUI_GIM(java.lang.String title,
java.lang.String addText)
title - dialog title.addText - specify which fields are empty; or set to empty string.public void showGUI_GEM(java.lang.String title,
java.lang.String addText)
title - dialog title.addText - specify which fields are empty; or set to empty string.public void showGUI_WD(java.lang.String dirname)
dirname - correct directory name.public void showGUI_WF(java.lang.String filename)
filename - correct directory name.public void showGUI_VP(java.lang.String addtext)
addtext - information text.public void showGUI_CO()
public void showGUI_CONC()
public int showGUI_OCCF(java.lang.String existingFilename)
existingFilename - name of the questioned file.public void showGUI_IFPSV(java.lang.String filename,
java.lang.String program)
filename - incorrect file.program - program of corresponding file.public int showGUI_RE()
public int showGUI_RETR()
public int showGUI_RETRW()
public int showGUI_REWO()
public int showGUI_UNMA()
public int showGUI_FAEM(java.lang.String title)
title - dialog title.public java.lang.String showGUIAE_CFF(java.lang.String[] formats,
int quest)
formats - file formats.quest - decide which question to use. Values: QUESTION_CHOICE, QUESTION_ASK.public int showGUIAE_FAEO(java.lang.String title)
title - dialog title.public void showGUIAE_FENF(java.lang.String title)
title - dialog title.public void showGUIAE_FS(java.lang.String filesaved)
filesaved - name of saved file.public void showGUICP_OS()
public void showGUI_CNSF(java.lang.String fileNotsaved,
java.lang.String title,
java.lang.String addtext)
fileNotsaved - name of not saved file.title - dialog title.addtext - additional text to be added, if any.public void showGUIAE_PONC()
public int showGUIAE_RPSC()
public void showGUICP_DC(java.lang.String text)
text - Information message.public void showGUICP_URNE()
public void showGUICP_URNA()
public void showGUICP_UOK(java.lang.String text)
text - Information message.public void showGUICP_IURL(java.lang.String err)
err - java exception.public void showGUICP_PW()
public void showGUICP_NPAF()
public java.lang.String showGUIFFC_CPFT(java.lang.String[] pformats)
pformats - array with values Classic/Extended.public void showFFC_VMPF()
public void showFFC_FNC()
public void showFFC_RSAOB(java.lang.String formattxt,
int seqcount,
java.lang.String aiobex)
formattxt - format where reading is taking place.seqcount - sequence number identifying sequence where error ocurred.aiobex - java error.public void showFFC_FBF(java.lang.String formattxt)
formattxt - format where reading is taking place.public void showGUI_FBF(java.lang.String filename)
filename - file name or field where reading is taking place.public void showFFC_DSLF(java.lang.String formattxt,
java.lang.String seqdiff)
formattxt - format where reading is taking place.seqdiff - number of differing sequences.public void showRV_RCAOB(java.lang.String flname,
int csvrow,
java.lang.String aiobex)
flname - file name where reading is taking place.csvrow - csv row number identifying where error ocurred.aiobex - java error.public int showGUIRS_NSS(java.lang.String title)
title - dialog title.public void showRS_FBF()
public void showRS_SCNF()
public void showUTIL_FNF(java.lang.String program_file)
program_file - name of file not found.public void showUTIL_FEF(java.lang.String program_file,
int nummsg)
program_file - file with empty fields.nummsg - value 0 or other.public void showUTIL_IOF()
public void showUTIL_BFF(java.lang.String file,
java.lang.String errorline)
file - File giving errors.errorline - line that produced error.public void showUTIL_FMF(java.lang.String program_file)
program_file - file with error.public void showUTIL_GWL(java.lang.String rightLoc)
rightLoc - Correct location for jar archive.public void showUTIL_MD(java.lang.String rightDir,
java.lang.String otherinfo)
rightDir - Correct location for jar archive.otherinfo - other info to add to message, use otherwise empty.public void showUTIL_NAF(java.lang.String aai1Name)
aai1Name - (incorrect) AAIndex1 file name.