Constant Field Values

Contents

• IMPACT_S.*

IMPACT_S.*

IMPACT_S.AlignmentEditor

Modifier and Type	Constant Field	Value
public static final java.lang.String	TMPMSA_FILE	"msafile_to_phyml.tmp"

IMPACT_S.CodemlOptions

Modifier and Type	Constant Field	Value
public static final java.lang.String	codemlCtrlflLocKey	"CodemlCtrlFile"
public static final java.lang.String	codemlDirLocKey	"CodemlDir"
public static final java.lang.String	msaflLocKey	"MSAfl"
public static final java.lang.String	outflLocKey	"Outputfl"
public static final java.lang.String	tmpcodemlCtrlflLocKey	"TMPCodemlCtrlFile"
public static final java.lang.String	tmpmsaflLocKey	"TMPMSAfl"
public static final java.lang.String	tmpoutflLocKey	"TMPOutputfl"
public static final java.lang.String	tmptreeflLocKey	"TMPTreefl"
public static final java.lang.String	treeflLocKey	"Treefl"

IMPACT_S.CodemlTP

Modifier and Type	Constant Field	Value
public static final java.lang.String	ControlFileKey	"CodemlCtrlFile"
public static final java.lang.String	MSAFileKey	"MSAFile"
public static final java.lang.String	OutputFileKey	"OutputFile"
public static final java.lang.String	TreeFileKey	"TreeFile"

IMPACT_S.DatamonkeyTP

Modifier and Type	Constant Field	Value
public static final int	CommonModels	9
public static final java.lang.String	FELFileLocKey	"FELFile"
public static final int	FELmodel	1
public static final java.lang.String	FUBARFileLocKey	"FUBARFile"
public static final int	FUBARmodel	4
public static final java.lang.String	MEMEFileLocKey	"MEMEFile"
public static final int	MEMEmodel	3
public static final java.lang.String	RELFileLocKey	"RELFile"
public static final int	RELmodel	2
public static final java.lang.String	SLACFileLocKey	"SLACFile"
public static final int	SLACmodel	0

IMPACT_S.FileFormat

Modifier and Type	Constant Field	Value
public static final java.lang.String	CLUSTAL_F	"Clustal"
public static final char	CLUSTAL_TYPE	67
public static final java.lang.String	DCSE_F	"DCSE"
public static final int	DESTINATION	0
public static final java.lang.String	FASTA_F	"Fasta"
public static final char	FASTA_TYPE	70
public static final java.lang.String	MASE_F	"Mase"
public static final char	MASE_TYPE	77
protected static final java.lang.String	PCLASSIC_F	"Classic"
protected static final java.lang.String	PEXTENDED_F	"Extended"
public static final char	PHYLIP_TYPE	80
public static final java.lang.String	PHYLIPG_F	"Phylip"
public static final java.lang.String	PHYLIPI_F	"Phylip(I)"
public static final java.lang.String	PHYLIPS_F	"Phylip(S)"
public static final int	SOURCE	1

IMPACT_S.GUIColorSchemes

Modifier and Type	Constant Field	Value
public static final java.lang.String	AAAminoJKey	"[Amino (Jmol)] (AA) Scheme"
public static final java.lang.String	AADMSitesKey	"[Datamonkey Sites] (AA) Scheme"
public static final java.lang.String	AAPAMLBEBM282Key	"[M2+8,2] (AA) Scheme"
public static final java.lang.String	AAPAMLBEBM283Key	"[M2+8,3] (AA) Scheme"
public static final java.lang.String	AAPAMLBEBM28Key	"[M2 or M8] (AA) Scheme"
public static final java.lang.String	AASeaviewKey	"[Seaview] (AA) Scheme"
public static final java.lang.String	AAShapelyJKey	"[Shapely (Jmol)] (AA) Scheme"
public static final java.lang.String	AASideChainsKey	"[Side Chains] (AA) Scheme"
public static final java.lang.String	AATSCMLMRKey	"[Merged Results] (AA) Scheme"
public static final java.lang.String	AATSType123Key	"[Type I,II,III] (AA) Scheme"
public static final java.lang.String	AATSTypeIIIKey	"[Type III] (AA) Scheme"
public static final java.lang.String	AATSTypeIIIUKey	"[Type III User] (AA) Scheme"
public static final java.lang.String	AATSTypeIIKey	"[Type II] (AA) Scheme"
public static final java.lang.String	AATSTypeIKey	"[Type I] (AA) Scheme"
public static final java.lang.String	DRNAIMPACTKey	"[IMPACT] (DNA/RNA) Scheme"
public static final java.lang.String	DRNAJalviewKey	"[Jalview] (DNA/RNA) Scheme"
public static final java.lang.String	DRNAMEGAKey	"[MEGA] (DNA/RNA) Scheme"
public static final java.lang.String	DRNASeaviewKey	"[Seaview] (DNA/RNA) Scheme"
public static final int	IndexAAAminoJ	14
public static final int	IndexAADatamonkeySites	7
public static final int	IndexAAMR	11
public static final int	IndexAAPAMLBEBM28	8
public static final int	IndexAAPAMLBEBM282	9
public static final int	IndexAAPAMLBEBM283	10
public static final int	IndexAASeaview	13
public static final int	IndexAAShapelyJ	15
public static final int	IndexAASideChains	12
public static final int	IndexAATSType123	6
public static final int	IndexAATSTypeI	2
public static final int	IndexAATSTypeII	3
public static final int	IndexAATSTypeIII	4
public static final int	IndexAATSTypeIIIU	5
public static final int	IndexDRNAIMPACT	18
public static final int	IndexDRNAJalview	20
public static final int	IndexDRNAMEGA	21
public static final int	IndexDRNASeaview	19

IMPACT_S.GUIDialogs

Modifier and Type	Constant Field	Value
public static final int	QUESTION_ASK_CHOICE	2
public static final int	QUESTION_ASK_SAVE	1
public static final int	QUESTION_CHOICE	0

IMPACT_S.GUIFileChooser

Modifier and Type	Constant Field	Value
public static final char	BOTH	98
public static final char	DIR	100
public static final char	FILE	102
public static final int	OPEN	0
public static final int	SAVE	1

IMPACT_S.ResultsN3DTP

Modifier and Type	Constant Field	Value
public static final java.lang.String	bebResults1LocKey	"BRLK1"
public static final java.lang.String	bebResults2LocKey	"BRLK2"
public static final java.lang.String	datamonkeySitesLocKey	"DMSLK"
public static final java.lang.String	downloadedPDBLocKey	"DPDBFLK"
public static final java.lang.String	jmolScriptPathLocKey	"JSPLK"
public static final java.lang.String	mergedResultsLocKey	"MRLK"
public static final java.lang.String	modelledPDBLocKey	"MPDBFLK"
public static final java.lang.String	pdbFilePathLocKey	"PDBFLLK"
public static final java.lang.String	propsByRangeLocKey	"PBRLK"
public static final java.lang.String	propsBySiteLocKey	"PBSLK"

IMPACT_S.ResultsView

Modifier and Type	Constant Field	Value
public static final int	FILE0	0
public static final int	FILE1	1

IMPACT_S.TreeSAAPTP

Modifier and Type	Constant Field	Value
public static final java.lang.String	EvpthwyDN	"Evpthwy"
public static final java.lang.String	EvpthwyLocKey	"EvpthwyDir"
public static final java.lang.String	NSynSubsFN	"NSynSubs.txt"
public static final java.lang.String	NSynSubsLocKey	"NSynSubsFl"
public static final java.lang.String	SlidingWindowDN	"SlidingWindow"
public static final java.lang.String	SlidingWLocKey	"SlidingWindowDir"
public static final java.lang.String	SubstsDN	"Substs"
public static final java.lang.String	SubstsLocKey	"SubstsDir"
public static final java.lang.String	SynSubsFN	"SynSubs.txt"
public static final java.lang.String	SynSubsLocKey	"SynSubsFl"
public static final java.lang.String	ZSigPropFN	"Z-SigProp.txt"
public static final java.lang.String	ZSigPropLocKey	"Z-SigPropFl"

IMPACT_S.Utilities

Modifier and Type	Constant Field	Value
public static final java.lang.String	ATVExeKey	"ATVExec"
public static final java.lang.String	BaseKey	"Base"
public static final java.lang.String	CodemlExeKey	"CodemlExec"
public static final java.lang.String	DatamonkeyDataKey	"DatamonkeyData"
public static final java.lang.String	DatamonkeyResDirName	"IDatamonkeyTabData"
public static final java.lang.String	DataSetDirName	"IDataSets"
public static final java.lang.String	DataSetKey	"DataSet"
public static final java.lang.String	GNUPLOTExeKey	"GnuPlot"
public static final java.lang.String	JmolExeKey	"JmolExec"
public static final java.lang.String	mydfltDSName	"MyDataset.d"
public static final java.lang.String	PAMLDataKey	"PAMLData"
public static final java.lang.String	PAMLResDirName	"IPAMLTabData"
public static final java.lang.String	PhyMLExeKey	"PhyMLExec"
public static final java.lang.String	programName	"IMPACT_S"
public static final java.lang.String	ProgramsKey	"Programs"
public static final java.lang.String	Results3DDirName	"IResultsTabData"
public static final java.lang.String	ResultsDataKey	"Results3DData"
public static final java.lang.String	SystemKey	"System"
public static final java.lang.String	TreeSAAPDataKey	"TreeSAAPData"
public static final java.lang.String	TreeSAAPExeKey	"TreeSAAPExec"
public static final java.lang.String	TreeSAAPResDirName	"ITreeSAAPTabData"