- main(String[]) - Static method in class IMPACT_S.GUI
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Main Method to start IMPACT_S.
- MASE_F - Static variable in class IMPACT_S.FileFormat
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MASE format name
- MASE_TYPE - Static variable in class IMPACT_S.FileFormat
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MASE format type
- MEMEFileLocKey - Static variable in class IMPACT_S.DatamonkeyTP
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MEME input file key.
- MEMEmodel - Static variable in class IMPACT_S.DatamonkeyTP
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MEME model code = 3.
- mergedResultsLocKey - Static variable in class IMPACT_S.ResultsN3DTP
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Location key for merge results in from ResultsN3D tab
- mergeResults(String, String, String) - Method in class IMPACT_S.ResultsN3DTP
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Merge all information from Datamonkey and PAML BEB (in case of positive selection) in any TreeSAAP data files (PBS/PBR).
- modelledPDBLocKey - Static variable in class IMPACT_S.ResultsN3DTP
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Location key for downloaded Modeled PDB file from Swiss Model modes
- MSAColumnColorRenderer - Class in IMPACT_S
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Implementation of specific Table Cell Renderer for presenting selected columns in MSA table.
- MSAColumnColorRenderer(Color, Color, Color, Color, int, HashMap<String, Color>) - Constructor for class IMPACT_S.MSAColumnColorRenderer
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Constructor for defining Color Renderer, with given colors.
- msafileIn - Variable in class IMPACT_S.FileFormat
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- MSAFileKey - Static variable in class IMPACT_S.CodemlTP
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Codeml input MSA file key.
- msafileOut - Variable in class IMPACT_S.FileFormat
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- msaflLocKey - Static variable in class IMPACT_S.CodemlOptions
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Location key for input MSA file.
- MSATableModel - Class in IMPACT_S
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Implementation of specific Table Model for Multiple Sequence Alignments.
- mydfltDSName - Static variable in class IMPACT_S.Utilities
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Default user defined data set name.