- DatamonkeyDataKey - Static variable in class IMPACT_S.Utilities
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GUI Datamonkey data location
- DatamonkeyResDirName - Static variable in class IMPACT_S.Utilities
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GUI Datamonkey tab results directory name.
- datamonkeySitesLocKey - Static variable in class IMPACT_S.ResultsN3DTP
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Location key for datamonkey sites files (All methods (Pos/Neg) plus Common Sites (Pos/Neg)) from Datamonkey tab
- DatamonkeyTP - Class in IMPACT_S
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Class to handle Datamonkey results and generate data from models SLAC, FEL, REL, MEME and FUBAR.
- DatamonkeyTP(Utilities) - Constructor for class IMPACT_S.DatamonkeyTP
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Initialize Datamonkey tab.
- DataSetDirName - Static variable in class IMPACT_S.Utilities
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GUI base data sets directory name.
- DataSetKey - Static variable in class IMPACT_S.Utilities
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GUI DataSet directory location
- DCSE_F - Static variable in class IMPACT_S.FileFormat
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DCSE format name (discontinued).
- DESTINATION - Static variable in class IMPACT_S.FileFormat
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Output files
- DIR - Static variable in class IMPACT_S.GUIFileChooser
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constructor parameter 'type' value, indicates Directory selection.
- doInBackground() - Method in class IMPACT_S.CodemlTask
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- doInBackground() - Method in class IMPACT_S.GenericJarTask
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Background task of jar file.
- doInBackground() - Method in class IMPACT_S.GnuplotTask
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- doInBackground() - Method in class IMPACT_S.PhyMLTask
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- done() - Method in class IMPACT_S.CodemlTask
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- done() - Method in class IMPACT_S.GenericJarTask
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Termination of execution.
- done() - Method in class IMPACT_S.GnuplotTask
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- done() - Method in class IMPACT_S.PhyMLTask
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- downloadedPDBLocKey - Static variable in class IMPACT_S.ResultsN3DTP
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Location key for downloaded PDB file from Swiss Model Template Library
- downloadFile(String, File) - Method in class IMPACT_S.Utilities
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Download file pointed by url to file.
- DRNAIMPACTKey - Static variable in class IMPACT_S.GUIColorSchemes
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(DNA/RNA) Color Scheme Key for IMPACT scheme (predefined colors)
- DRNAJalviewKey - Static variable in class IMPACT_S.GUIColorSchemes
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(DNA/RNA) Color Scheme Key for Jalview scheme (predefined colors)
- DRNAMEGAKey - Static variable in class IMPACT_S.GUIColorSchemes
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(DNA/RNA) Color Scheme Key for MEGA scheme (predefined colors)
- DRNASeaviewKey - Static variable in class IMPACT_S.GUIColorSchemes
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(DNA/RNA) Color Scheme Key for Seaview scheme (predefined colors)