- writeCodemlCtlFile(boolean) - Method in class IMPACT_S.CodemlOptions
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Write options to file.
- writeMSAFile(boolean[], boolean[], String, String) - Method in class IMPACT_S.AlignmentEditor
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Write sequences to specified file and format after filtering.
- writeMSAFile() - Method in class IMPACT_S.FileFormatConverter
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Write to instantiated destination MSA file and format.
- writePreferences(boolean) - Method in class IMPACT_S.Utilities
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Save (user) preferences to file.
- writeSelectionToFile(int, boolean, String) - Method in class IMPACT_S.DatamonkeyTP
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Write selected datamonkey summary of sites to file, given model code and if positive or negative selection.
- writeSeqsToFile() - Method in class IMPACT_S.FileFormatReader
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Write all sequences to file using chosen format.
- writeSeqToFile(int) - Method in class IMPACT_S.FileFormatReader
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Write specific sequence to file using chosen format.
- writeToFile(String[], String, String) - Method in class IMPACT_S.Utilities
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Write an array of lines to file.