- IMAGE_ICON_RESOURCE_PATH - Static variable in class IMPACT_S.Utilities
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image icon path from IMPACT.resources
- IMAGE_INIT_RESOURCE_PATH - Static variable in class IMPACT_S.Utilities
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image icon path from IMPACT.resources
- IMPACT_S - package IMPACT_S
-
- importInputFiles(boolean) - Method in class IMPACT_S.CodemlOptions
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Import input files to codeml directory.
- IndexAAAminoJ - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) Amino Color Scheme
- IndexAADatamonkeySites - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) Datamonkey Sites Color Scheme
- IndexAAMR - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) Merged Results Color Scheme
- IndexAAPAMLBEBM28 - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) PAMLBEB BEB M2 or M8 Color Scheme
- IndexAAPAMLBEBM282 - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) PAMLBEB BEB M2 and M8: (2 Colors) Color Scheme
- IndexAAPAMLBEBM283 - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) PAMLBEB BEB M2 and M8: (3 Colors) Color Scheme
- IndexAASeaview - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) Seaview Color Scheme
- IndexAAShapelyJ - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) Shapely Color Scheme
- IndexAASideChains - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (Amino-Acid) Side Chains Color Scheme
- IndexAATSType123 - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (Amino-Acid) All Type I,II,III Color Schemes
- IndexAATSTypeI - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (Amino-Acid) Type I Color Scheme
- IndexAATSTypeII - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (Amino-Acid) Type II Color Scheme
- IndexAATSTypeIII - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (Amino-Acid) Type III Color Scheme
- IndexAATSTypeIIIU - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (Amino-Acid) Type III User Color Scheme
- IndexDRNAIMPACT - Static variable in class IMPACT_S.GUIColorSchemes
-
Index of the (DNA/RNA) Amino Color Scheme
- IndexDRNAJalview - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (DNA/RNA) Jalview Color Scheme
- IndexDRNAMEGA - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (DNA/RNA) MEGA Color Scheme
- IndexDRNASeaview - Static variable in class IMPACT_S.GUIColorSchemes
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Index of the (DNA/RNA) Seaview Color Scheme
- initializeNormalView(boolean[]) - Method in class IMPACT_S.AlignmentEditor
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Initialize normal view of data (by sequence).
View can be by sequence or by site, in terms of rows.
- initializeOppositeView(boolean[]) - Method in class IMPACT_S.AlignmentEditor
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Initialize opposite view of data (by site).
View can be by sequence or by site, in terms of rows.
- isCellEditable(int, int) - Method in class IMPACT_S.CSVTableModel
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Test if cell is editable.
- isCellEditable(int, int) - Method in class IMPACT_S.MSATableModel
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Test if cell is editable.
- isCellEditable(int, int) - Method in class IMPACT_S.PDBSeqTableModel
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Test if cell is editable.
- isdone() - Method in class IMPACT_S.CodemlTask
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Verify if task has terminated.
- isdone() - Method in class IMPACT_S.GenericJarTask
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Test if task has terminated.
- isdone() - Method in class IMPACT_S.GnuplotTask
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Verify if task has terminated.
- isdone() - Method in class IMPACT_S.PhyMLTask
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Verify if task has terminated.
- isFileWritten() - Method in class IMPACT_S.CodemlOptions
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If codeml options file was written.
- isWhite(String) - Method in class IMPACT_S.FileFormat
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Determine if a given line is consists of only white space (space or tab).