- FASTA_F - Static variable in class IMPACT_S.FileFormat
-
FASTA format name
- FASTA_TYPE - Static variable in class IMPACT_S.FileFormat
-
FASTA format type
- FCriticalValue(double, int, int) - Method in class IMPACT_S.Statistics
-
Critical value for given probability of F-distribution.
- FELFileLocKey - Static variable in class IMPACT_S.DatamonkeyTP
-
FEL input file key.
- FELmodel - Static variable in class IMPACT_S.DatamonkeyTP
-
FEL model code = 1.
- FILE - Static variable in class IMPACT_S.GUIFileChooser
-
constructor parameter 'type' value, indicates File selection.
- FILE0 - Static variable in class IMPACT_S.ResultsView
-
Choose File1
- FILE1 - Static variable in class IMPACT_S.ResultsView
-
Choose File2
- FileFormat - Class in IMPACT_S
-
Class for storing basic information about Sequence Files.
- FileFormat() - Constructor for class IMPACT_S.FileFormat
-
FileFormat empty constructor.
- FileFormat(String, int) - Constructor for class IMPACT_S.FileFormat
-
Initialize FileFormat.
- FileFormatConverter - Class in IMPACT_S
-
Implementation of functions to read/write several formats of MSA files.
- FileFormatConverter() - Constructor for class IMPACT_S.FileFormatConverter
-
Initialize File Converter.
- FileFormatConverter(File, String, int) - Constructor for class IMPACT_S.FileFormatConverter
-
Build file converter with file and format.
- FileFormatConverter(File, String, File, String) - Constructor for class IMPACT_S.FileFormatConverter
-
Build file converter with source and destination files.
- FileFormatReader - Class in IMPACT_S
-
Class to handle the reading/writing of non-aligned sequences files.
- FileFormatReader(String, String, int) - Constructor for class IMPACT_S.FileFormatReader
-
FileFormatReader constructor method.
- FILEFORMATS - Static variable in class IMPACT_S.FileFormat
-
Collection of format names.
- filterAlignmentSites(HashMap<String, String>, boolean, boolean) - Method in class IMPACT_S.AlignmentOperations
-
Create a new shorter alignment, in which only selected sites
gathered from any significant codons file, are preserved.
- firstCharUp(String) - Method in class IMPACT_S.Utilities
-
Get given string with only first character to upper case.
Remaining part to lower case.
- FProbability(double, int, int) - Method in class IMPACT_S.Statistics
-
Computes probability of F-ratio.
- FUBARFileLocKey - Static variable in class IMPACT_S.DatamonkeyTP
-
FUBAR input file key.
- FUBARmodel - Static variable in class IMPACT_S.DatamonkeyTP
-
FUBAR model code = 4.