- tmpcodemlCtrlflLocKey - Static variable in class IMPACT_S.CodemlOptions
-
Location key for system codeml control file.
- TMPMSA_FILE - Static variable in class IMPACT_S.AlignmentEditor
-
Temporary MSA file for input to PhyML.
- tmpmsaflLocKey - Static variable in class IMPACT_S.CodemlOptions
-
Location key for temporary input MSA file.
- tmpoutflLocKey - Static variable in class IMPACT_S.CodemlOptions
-
Location key for temporary output file.
- tmptreeflLocKey - Static variable in class IMPACT_S.CodemlOptions
-
Location key for temporary input Tree file.
- translateSequence(int, int, boolean) - Method in class IMPACT_S.SequenceTranslator
-
Translate a DNA/RNA sequence into Protein.
- translateSequence(int, String, boolean) - Method in class IMPACT_S.SequenceTranslator
-
Translate a DNA/RNA sequence into Protein.
- TreeFileKey - Static variable in class IMPACT_S.CodemlTP
-
Codeml input Tree file key.
- treeflLocKey - Static variable in class IMPACT_S.CodemlOptions
-
Location key for input Tree file.
- TreeSAAPDataKey - Static variable in class IMPACT_S.Utilities
-
GUI TreeSAAP data location
- TreeSAAPExeKey - Static variable in class IMPACT_S.Utilities
-
TreeSAAP program location
- TreeSAAPResDirName - Static variable in class IMPACT_S.Utilities
-
GUI TreeSAAP tab results directory name.
- TreeSAAPTP - Class in IMPACT_S
-
Class for handling TreeSAAP results and input data.
- TreeSAAPTP(Utilities) - Constructor for class IMPACT_S.TreeSAAPTP
-
Initialize TreeSAAP Panel resources
- tryGetSubLocationsE(String) - Method in class IMPACT_S.TreeSAAPTP
-
Set top directory for TreeSAAP results.
- tryGetSubLocationsS(String) - Method in class IMPACT_S.TreeSAAPTP
-
Set top directory for TreeSAAP results.